Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 4,457,723 | G→C | G156G (GGG→GGC) | ytfT → | predicted sugar transporter subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 4,457,723 | 0 | G | C | 92.9% | 39.5 / ‑3.3 | 14 | G156G (GGG→GGC) | ytfT | predicted sugar transporter subunit |
Reads supporting (aligned to +/- strand): ref base G (0/1); new base C (0/13); total (0/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGTCGCCGGGCGCGGCGTGGCGCAACTGATCACCGCCGGGCAGATCGTCACGTTTAACTCGCCGGATCTCTCATG > W3110S.gb/4457684‑4457758 | ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:1199813/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:1365100/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:1587618/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:1718100/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:20525/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:2129718/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:2143036/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:2655365/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:2708432/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:2708737/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:2895941/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCTGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:839165/51‑1 (MQ=255) ggTGGCGGGCCGCGGCCGGGCGCAGTTGCTGACCGACGGCCAGATCGTCAc < 1:772625/51‑1 (MQ=255) gcgTGGCGCAACTGATCACCGCCGGGCAGATCGTCACGTTTAACTCGCCGGATCTCTCATg < 1:2390815/61‑1 (MQ=255) | GGTCGCCGGGCGCGGCGTGGCGCAACTGATCACCGCCGGGCAGATCGTCACGTTTAACTCGCCGGATCTCTCATG > W3110S.gb/4457684‑4457758 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |