| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 1,383,152 | G→C | V206V (GTG→GTC) | ycjV → | predicted sugar transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,383,152 | 0 | G | C | 83.9% | 76.9 / 8.6 | 31 | V206V (GTG→GTC) | ycjV | predicted sugar transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/5); new base C (26/0); total (26/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.89e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 | |||||||||||
GATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGC > W3110S.gb/1383114‑1383189 | gATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCa < 1:2749202/62‑1 (MQ=255)gATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCa < 1:2355991/62‑1 (MQ=255)gATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCa < 1:2332416/62‑1 (MQ=255)gATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCa < 1:2430459/62‑1 (MQ=255)gATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCa < 1:1659030/62‑1 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:3049202/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2999832/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2925891/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:963217/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2739244/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:271515/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2627026/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:254349/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:335543/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2415020/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:799735/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1062526/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2334252/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2320638/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2269369/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:2145760/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1998699/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1872924/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1856532/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1776931/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1703676/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1618667/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1498339/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1426594/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGATGGGATTGTTCAGCAGGTCGGTgcgc > 1:1351876/1‑61 (MQ=255) aTGACCATGGCGACGCGGATTGTCATTATGAAGGAGGGGATTGTTCAGCAGGTCGGTgcgc > 1:2183666/1‑61 (MQ=255) | GATCAGACCGAAGCGATGACCATGGCGACGCGGATTGTGATTATGAAAGACGGGATTGTTCAGCAAGTAGGTGCGC > W3110S.gb/1383114‑1383189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |