Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | W3110S.gb | 2,032,239 | A→T | A188A (GCA→GCT) | yedA → | predicted inner membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | W3110S.gb | 2,032,239 | 0 | A | T | 75.0% | 15.6 / 3.5 | 12 | A188A (GCA→GCT) | yedA | predicted inner membrane protein |
Reads supporting (aligned to +/- strand): ref base A (2/1); new base T (9/0); total (11/1) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.50e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.01e-01 |
TTACCTGTAGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCG > W3110S.gb/2032195‑2032263 | ttacctGTAGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGAt > 1:1703983/1‑62 (MQ=255) ttaccgGTAGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGAt > 1:1799812/1‑62 (MQ=255) tGTAGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGt < 1:2658639/62‑1 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGc > 1:1214222/1‑40 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGCGTGGTGTTAATGATCGCGTCg > 1:1609888/1‑61 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGCGTGGTGTTAATGATCGCGTCg > 1:1656333/1‑61 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGCGTGGTGTTAATGATCGCGTCg > 1:1682514/1‑61 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGCGTGGTGTTAATGATCGCGTCg > 1:2205518/1‑61 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGCGTGGTGTTAATGATCGCGTCg > 1:2466785/1‑61 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGCGTGGTGTTAATGATCGCGTCg > 1:2485275/1‑61 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGCGTGGTGTTAATGATCGCGTCg > 1:916546/1‑61 (MQ=255) aGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCTGGCGTGGTGTTAATGATCGCGACg > 1:884637/1‑61 (MQ=255) | TTACCTGTAGGGATGATGGCGGGTGCGATTGAGATGCTGGCGGCAGGCGTGGTGTTAATGATCGCGTCG > W3110S.gb/2032195‑2032263 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |