| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 3,824,380 | 2 bp→AA | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,824,380 | 0 | G | A | 100.0% | 176.1 / NA | 57 | pseudogene (513/687 nt) | rph | ECK3633:JW3618:b3643; ribonuclease PH |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (44/13); total (44/13) | |||||||||||
| * | W3110S.gb | 3,824,381 | 0 | G | A | 100.0% | 176.3 / NA | 57 | pseudogene (514/687 nt) | rph | ECK3633:JW3618:b3643; ribonuclease PH |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (44/13); total (44/13) | |||||||||||
GGGATGGTAGCCGCAGTTTCTGTCGGAATTGTGAACGGCGAAGCGGTTTGCGATCTGGAATACGTTGAAGACTCTGCCGCAGAGACCGACA > W3110S.gb/3824336‑3824426 || gggATGGTAGCCGCAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATa < 1:2180705/62‑1 (MQ=255)gggATGGTAGCCGCAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATa < 1:2028880/62‑1 (MQ=255)gggATGGTAGCCGCAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATa < 1:2837426/62‑1 (MQ=255)gggATGGTAGCCGCAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATa < 1:702893/62‑1 (MQ=255)gggATGGTAGCCGCAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATa < 1:443546/62‑1 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:55672/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:2192026/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:2447823/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:2557722/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:2788960/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:161145/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:1452667/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:1360138/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:82213/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:1269128/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:908756/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTg > 1:940742/1‑54 (MQ=255) cAGTTTCTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATAAGTTg > 1:462157/1‑54 (MQ=255) cTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGa < 1:1144801/49‑1 (MQ=25) cTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGa < 1:2842257/49‑1 (MQ=25) cTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGa < 1:799110/49‑1 (MQ=25) cTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGa < 1:2252996/49‑1 (MQ=25) cTGTCGGTATTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGa < 1:1150037/49‑1 (MQ=25) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGcc > 1:861439/3‑53 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:1979953/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:467215/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:59661/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:60247/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:2990635/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:1529918/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:1842153/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:804781/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:1278225/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:857830/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:866454/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGAcc > 1:2168159/3‑62 (MQ=255) gtaTTGTAAACGGTGAAGCAATTCGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGccc > 1:2133632/3‑62 (MQ=255) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:109904/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:657976/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:61709/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:580899/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:1676879/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:536377/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:1757534/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:1830336/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:357957/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:2880747/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:2032448/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:272674/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:2597915/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:2597016/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:2515142/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:2365184/2‑48 (MQ=25) taTTGTAAACGGTGAAGCAATTTGCGATCTGGAATACGTTGAAGActca > 1:2318025/2‑48 (MQ=25) aTTGTAAACGGTGAAGCAATTTGCGATCTGGAATa < 1:739343/35‑1 (MQ=16) tgAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACa < 1:2920547/52‑1 (MQ=255) tgAAGCAATTTGCGATCTGGAATACGTTGAAGACTCAGCCGCAGAGACCGACa < 1:1288803/52‑1 (MQ=255) || GGGATGGTAGCCGCAGTTTCTGTCGGAATTGTGAACGGCGAAGCGGTTTGCGATCTGGAATACGTTGAAGACTCTGCCGCAGAGACCGACA > W3110S.gb/3824336‑3824426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |