| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 4,598,305 | Δ5 bp | coding (1096‑1100/1362 nt) | yjiZ ← | predicted transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 4,598,301 | 0 | A | . | 84.8% | 138.8 / 26.4 | 46 | coding (1104/1362 nt) | yjiZ | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (7/0); new base . (0/39); total (7/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 | |||||||||||
| * | W3110S.gb | 4,598,302 | 0 | C | . | 84.8% | 134.5 / 27.0 | 46 | coding (1103/1362 nt) | yjiZ | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base C (7/0); new base . (0/39); total (7/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 | |||||||||||
| * | W3110S.gb | 4,598,303 | 0 | A | . | 84.8% | 138.8 / 26.4 | 46 | coding (1102/1362 nt) | yjiZ | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (7/0); new base . (0/39); total (7/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 | |||||||||||
| * | W3110S.gb | 4,598,304 | 0 | G | . | 84.8% | 130.2 / 25.2 | 46 | coding (1101/1362 nt) | yjiZ | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base G (7/0); new base . (0/39); total (7/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 | |||||||||||
| * | W3110S.gb | 4,598,305 | 0 | A | . | 84.8% | 138.8 / 26.4 | 46 | coding (1100/1362 nt) | yjiZ | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (7/0); new base . (0/39); total (7/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 | |||||||||||
GTTCCGGCAAAGTGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCTTGTGG > W3110S.gb/4598284‑4598357 ||||| gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCTATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2239914/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:379723/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2211333/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1007445/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2292826/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2475164/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2520156/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2709135/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2733046/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2810004/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2819883/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2219366/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:55891/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:568094/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:570182/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:591067/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:763456/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:804766/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:830056/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:893976/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:95819/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:970261/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2096856/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1127730/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1166244/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1258521/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1279331/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1325214/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1342703/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1399074/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:149597/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1616110/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1624722/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1686313/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1728622/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1751669/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:1850838/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:2002564/62‑1 (MQ=255)gTTCCGGCAAAGTGAAT‑‑‑‑‑ACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCg < 1:210514/62‑1 (MQ=255) tGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCTTGTgg > 1:1621405/1‑62 (MQ=255) tGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCTTGTgg > 1:287870/1‑62 (MQ=255) tGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCTTGTgg > 1:429745/1‑62 (MQ=255) tGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCTTGTgg > 1:1603718/1‑62 (MQ=255) tGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCTTGTgg > 1:2777608/1‑62 (MQ=255) tGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCTTGTgg > 1:1103005/1‑62 (MQ=255) tGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCGTGTgg > 1:2026020/1‑62 (MQ=255) ||||| GTTCCGGCAAAGTGAATACAGAACAGTGCCATGCCAATCAGCAGAACCGCCGTCATGGATGTTGTCGCTTGTGG > W3110S.gb/4598284‑4598357 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |