| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 690,921 | +G | coding (383/1539 nt) | lnt ← | apolipoprotein N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 690,917 | 1 | . | G | 80.0% | 79.7 / 15.7 | 30 | coding (387/1539 nt) | lnt | apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (6/0); new base G (24/0); total (30/0) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGCAGAAACTCGGTCACTTGCCAGAGGGCA‑GGG‑GCGGCAATCGCTACGCGCAGCCAGGTGG > W3110S.gb/690887‑690948 | gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTAcgcg > 1:401670/1‑52 (MQ=39)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:2197516/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:781799/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:721734/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:698225/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:532872/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:412478/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:2778062/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:2623822/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:2489486/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:2332925/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1115938/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:2133880/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1152930/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1776837/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1178282/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1676777/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1334409/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1976717/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1485420/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:1436284/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtg > 1:140642/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GAGGCAATc > 1:1488499/1‑44 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCA‑GGGCGCGGCAATCg > 1:2227906/1‑45 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCA‑GGG‑GCGGCAATCGCTACGCGCAGCCAggtgg > 1:1493896/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCA‑GGG‑GCGGCAATCGCTACGCGCAGCCAggtgg > 1:532881/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCA‑GGG‑GCGGCAATCGCTACGCGCAGCCAggtgg > 1:2406813/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCA‑GGG‑GCGGCAATCGCTACGCGCAGCCAggtgg > 1:2262645/1‑62 (MQ=255)gcgcAGAAACTCGGTCACTTGCCAGAGGGCA‑GGG‑GCGGCAATCGCTACGCGCAGCCAggtgg > 1:1882001/1‑62 (MQ=255) gcgaGAAACTCGGTCACTTGCCAGAGGGCAGGGG‑GCGGCAATCGCTACGCGCAGCCAggtgg > 1:1562221/4‑62 (MQ=255) | GCGCAGAAACTCGGTCACTTGCCAGAGGGCA‑GGG‑GCGGCAATCGCTACGCGCAGCCAGGTGG > W3110S.gb/690887‑690948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |