Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	W3110S.gb	2,320,795	Δ1,336 bp		insD–[rcsC]	insD, insC, [rcsC]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2320795	2322130	1336	22 [0]	[0] 21	insD–[rcsC]	insD,insC,[rcsC]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2320794	0 (0.000)	21 (0.730)	3/100	0.1	100%	intergenic (‑59/+11)	rcsC/insD	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN/IS2 element protein
	?	W3110S.gb	2322131 =	0 (0.000)					coding (2368/2424 nt)	rcsC	hybrid sensory kinase in two‑component regulatory system with RcsB and YojN

CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2320744‑2320794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgtCGCTCTCCATCTCG  >  W3110S.gb/2322131‑2322144                                                                   CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     <  1:2253473/62‑1 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:949759/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:86486/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:814275/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     <  1:447982/62‑1 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:364959/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:303180/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:2577484/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:1028381/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     <  1:2141149/62‑1 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     <  1:2035195/62‑1 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     <  1:1978630/62‑1 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:1784523/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     <  1:1775012/62‑1 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:1769649/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     <  1:1533395/62‑1 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:1503568/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     >  1:1492713/1‑62 CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCAT      >  1:2513572/1‑61    TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATCTCG  >  1:2147441/1‑62    TATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT                >  1:2592877/1‑48                          TGACGGCAGAGCGTTAGCAGGATCGTCGCTCTCCATC     <  1:2471576/37‑1                                                                   CATTATCGCTGACCGCTTTGTCCGTTGACGGCAGAGCGTTAGCAGGATCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2320744‑2320794 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcgtCGCTCTCCATCTCG  >  W3110S.gb/2322131‑2322144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.