Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1964864	1964906	43	30 [0]	[0] 7	flhA	predicted flagellar export pore protein

GCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCT  >  W3110S.gb/1964802‑1964863                                                              | gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCTCCCAGCATCTCCTGACGGGATAGCGCt  >  1:192909/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:2636295/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:935462/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:860679/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:737072/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:677724/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:608332/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:559751/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:430480/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:319648/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:28995/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:2816786/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:2750531/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:1432610/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:2626989/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:2450967/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:2364630/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:2303493/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:2236639/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:216400/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:1880173/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:1873556/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:1801917/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:1750951/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:166122/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:1644152/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:1594213/1‑62 (MQ=255) gCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGAATAGCGCt  >  1:451919/1‑62 (MQ=255) gCAGCCCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:396384/1‑62 (MQ=255) gCAGCCCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCt  >  1:399842/1‑62 (MQ=255)                                                              | GCAGCGCGTGGTTCACCAACAATACTGGCGGCGCACCCAGCATCTCCTGACGGGATAGCGCT  >  W3110S.gb/1964802‑1964863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑