Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006304	2006334	31	22 [0]	[0] 22	fliD	flagellar filament capping protein

CACCACCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCG  >  W3110S.gb/2006242‑2006303                                                              | caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:2185303/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:815705/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:701756/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:625816/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:610297/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:58631/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:55452/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:2483012/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:242126/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:2205819/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1985057/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1926043/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1868565/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1531839/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1525790/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1297719/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1293881/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1179143/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1170921/62‑1 (MQ=255) caccacCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:116236/62‑1 (MQ=255) caccacCGCGTTCAGTGACACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:1058630/62‑1 (MQ=255)  accaccGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCg  <  1:2868490/61‑1 (MQ=255)                                                              | CACCACCGCGTTCAGTGCCACCACTGCGGGTAACGCCATCGCCGGGAAATACACCATCAGCG  >  W3110S.gb/2006242‑2006303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑