Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2075249	2075254	6	8 [0]	[0] 8	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

CACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTA  >  W3110S.gb/2075187‑2075248                                                              | caccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTa  <  1:148345/62‑1 (MQ=255) caccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTa  <  1:1503275/62‑1 (MQ=255) caccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTa  <  1:1548173/62‑1 (MQ=255) caccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTa  <  1:1549320/62‑1 (MQ=255) caccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTa  <  1:1698715/62‑1 (MQ=255) caccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTa  <  1:2239940/62‑1 (MQ=255) caccacACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTa  <  1:964041/62‑1 (MQ=255)                          aaCCTGAATGAAGGCACGCTGACGCTGAACGACAGTa  <  1:1500054/37‑1 (MQ=255)                                                              | CACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTA  >  W3110S.gb/2075187‑2075248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑