Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2100212	2100243	32	19 [0]	[0] 29	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

CAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATG  >  W3110S.gb/2100150‑2100211                                                              | cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:1973193/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2303703/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2433787/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:878459/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2565932/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2590603/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2621319/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2896306/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:384471/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:573117/62‑1 (MQ=255) cAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:624603/62‑1 (MQ=255) cAATTAACGTCCCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:1236169/62‑1 (MQ=255)  aaTTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2656884/61‑1 (MQ=255)  aaTTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:886461/61‑1 (MQ=255)  aaTTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:786967/61‑1 (MQ=255)  aaTTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:748612/61‑1 (MQ=255)  aaTTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2881115/61‑1 (MQ=255)  aaTTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:2489739/61‑1 (MQ=255)  aaTTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATg  <  1:1435640/61‑1 (MQ=255)                                                              | CAATTAACGTCTCCTGCAAATCCGATACTTTCGGTGCAGCCTGACCATAGATAACATTCATG  >  W3110S.gb/2100150‑2100211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑