Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2225211	2225332	122	31 [0]	[0] 19	[bglX]	[bglX]

CGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTG  >  W3110S.gb/2225149‑2225210                                                              | cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2158109/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:827307/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:794903/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:753776/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:595764/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:520626/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:470598/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2896871/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2833146/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2796480/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2658937/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2492843/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2432294/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2359583/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2315993/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2256922/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1017643/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:2018014/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1981745/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1965369/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1847836/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1810813/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1753282/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1623887/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1556446/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1502830/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1475480/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1356241/62‑1 (MQ=255) cGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1330131/62‑1 (MQ=255)  gCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTg  <  1:1609135/61‑1 (MQ=255)          aGCGCAGCTGACCAATTTTCTCATCAACTGTGATTTTCTTAAGCAGTTCGGTg  <  1:1684755/53‑1 (MQ=255)                                                              | CGCTGATTAAGCGCAGCTGACCAATTTTCTCATCAACTGTCATTTTCTTAAGCAGTTCGGTG  >  W3110S.gb/2225149‑2225210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑