Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2317894	2317942	49	38 [1]	[0] 29	rcsD	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC

CGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATGAAGAGATA  >  W3110S.gb/2317841‑2317901                                                     |         cGTCCCCAGCACGGCGGTCAATAACGAATTGTGCATTTTACGGGCAATCAATg          >  1:1448535/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:363587/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2378546/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2402637/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2492503/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2559146/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2709622/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2752900/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2915055/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:298579/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:342553/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:236015/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:3738/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:499499/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:509039/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:578750/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:642264/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:770621/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:961026/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:966003/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2264233/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1239209/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1285867/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1287370/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1451350/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1550743/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1563347/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1577837/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1593470/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1708968/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1711784/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1761856/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1929458/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1984164/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2033119/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:2124776/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATg          >  1:1132722/1‑53 (MQ=255) cGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATGAAGAGAtc  >  1:1182186/1‑60 (MQ=255)                                                     |         CGTCCCCAGCACGGCGGTCAATAACGAATTGCGCATTTTACGGGCAATCAATGAAGAGATA  >  W3110S.gb/2317841‑2317901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑