Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2318184	2318188	5	45 [0]	[0] 12	rcsD	phosphotransfer intermediate protein in two‑component regulatory system with RcsBC

AGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTG  >  W3110S.gb/2318134‑2318183                                                  | aGGATTGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1535593/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2324281/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2299326/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2332110/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2352947/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2398434/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2621703/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2640372/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2647201/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2664025/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2677219/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2819265/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2877083/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2880473/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2916927/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:387364/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:419040/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:420756/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:438146/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:447127/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:552443/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:615156/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:930760/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1556380/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1175814/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1215142/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1226031/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1291491/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1293455/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1312499/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1381402/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1419751/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1480608/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1512165/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2310037/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1640560/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1647219/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1664208/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1858092/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1964260/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2022555/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2148851/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:2208805/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:226226/1‑50 (MQ=255) aGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTg  >  1:1062805/1‑50 (MQ=255)                                                  | AGGATCGCGAAGTGCTGGTAAACAAGAAACTCAAGCAGGCGCAGCGTCTG  >  W3110S.gb/2318134‑2318183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑