Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2740575	2740597	23	34 [0]	[0] 39	yfiR	hypothetical protein

ATCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCCTGCT  >  W3110S.gb/2740523‑2740574                                                    | aTCCCTGAATGCGTTTTTCTCACCGACTTTTCTTACTTCTGATACTCcttct  >  1:1325851/1‑52 (MQ=38) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:343872/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2164529/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2180054/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2423813/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2444500/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2475891/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2709226/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2745044/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:331216/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2116114/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:35671/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:4325/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:589580/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:666619/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:668927/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:822939/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:840371/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:104886/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2100613/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2032346/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:2011519/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:196974/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1825091/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1742488/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1687175/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1682928/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1676502/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1590265/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1399099/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1370151/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1309182/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1303300/1‑52 (MQ=255) aTCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCctgct  >  1:1175626/1‑52 (MQ=255)                                                    | ATCCCTGAATGCGTTTTTCTCACCGACTGTTCTTACTTCTGATTCTCCTGCT  >  W3110S.gb/2740523‑2740574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑