Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2966002	2966014	13	43 [0]	[0] 41	ptsP	fused PEP‑protein phosphotransferase (enzyme I) of PTS system

AGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAG  >  W3110S.gb/2965940‑2966001                                                              | aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:302069/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2039067/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2209483/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2254846/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2259307/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2301367/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:232325/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2368714/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2454798/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2578589/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:2903382/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1944071/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:412597/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:416348/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:438583/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:587107/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:609540/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:633780/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:647323/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:725714/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:835227/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:927347/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1687829/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1177252/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1227569/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1234610/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1361115/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1515081/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1528423/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1560704/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1570252/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1596680/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1604392/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1171365/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1691843/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1700972/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1708162/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:171539/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1730268/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1754404/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1883320/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAg  >  1:1890787/1‑62 (MQ=255) aGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATAACGGTAGGGATCCCCAg  >  1:1800580/1‑62 (MQ=255)                                                              | AGCGTCCTACGATGCAGCACCGAAGGCTGAATATCCGCGCCCATCACGGTAGGGATCCCCAG  >  W3110S.gb/2965940‑2966001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑