Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3346667	3346673	7	10 [0]	[0] 4	ptsN	sugar‑specific enzyme IIA component of PTS

CGGCAATGGTATTGCCATTCCGCATGGCAAACTGGAAGAA  >  W3110S.gb/3346627‑3346666                                        | cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:1039600/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:1256805/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:1488188/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:2303065/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:30351/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:327827/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:542048/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:907258/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGGCAAACTGgaagaa  >  1:947764/1‑40 (MQ=255) cGGCAATGGTATTGCCATTCCGCATGCCAAACTGgaagaa  >  1:1749987/1‑40 (MQ=255)                                        | CGGCAATGGTATTGCCATTCCGCATGGCAAACTGGAAGAA  >  W3110S.gb/3346627‑3346666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑