Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3839743	3839744	2	24 [0]	[0] 10	rfaY	lipopolysaccharide core biosynthesis protein

GATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTA  >  W3110S.gb/3839689‑3839742                                                      | gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2524206/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:848259/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:829238/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:804828/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:799110/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:772867/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:763817/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:653488/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2830513/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2779192/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2743229/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2629006/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:1031430/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2431610/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2422420/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2197893/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:1963645/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:1899574/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:171856/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:1536373/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:1200506/1‑54 (MQ=255) gATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGGACGAAATGAAGGGTTa  >  1:2523158/1‑54 (MQ=255) gATTATTACGAACGCCTTTTAGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:21150/1‑54 (MQ=255) gATTATTAAGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTa  >  1:2369617/1‑54 (MQ=255)                                                      | GATTATTACGAACGCCTTTTTGAGCAAACCCAAAAAGTACGAAATGAAGGGTTA  >  W3110S.gb/3839689‑3839742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑