Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3840539	3840575	37	32 [0]	[0] 4	rfaZ	lipopolysaccharide core biosynthesis protein

AGAGAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATAAA  >  W3110S.gb/3840477‑3840538                                                              | atagaAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:373416/60‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1033188/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:907386/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:858575/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:62844/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:481573/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:478209/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:334419/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:297376/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:2791307/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:2668009/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:2301580/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:2149608/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1864176/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:2063056/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1000415/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1090910/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1695620/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1685947/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1506166/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1094073/62‑1 (MQ=255) agagAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:138999/62‑1 (MQ=255)  gagaAGTCGTTATACCATAGTACACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:683145/61‑1 (MQ=255)  gagaAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:921450/61‑1 (MQ=255)  gagaAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1240193/61‑1 (MQ=255)  gagaAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1419816/61‑1 (MQ=255)  gagaAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:2575174/61‑1 (MQ=255)  gagaAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:2409364/61‑1 (MQ=255)  gagaAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1860899/61‑1 (MQ=255)  gagaAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:2281770/61‑1 (MQ=255)           ttATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:1217602/52‑1 (MQ=255)                          cGTTGACGTTTATGAACACGCTTCCAAAGAAGATaaa  <  1:581025/37‑1 (MQ=255)                                                              | AGAGAAGTCGTTATACCATAGTAAACGTTGACGTTTATGAACACGCTTCCAAAGAAGATAAA  >  W3110S.gb/3840477‑3840538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑