Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3860920	3860940	21	15 [0]	[0] 2	lldR	DNA‑binding transcriptional repressor

CCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAAACG  >  W3110S.gb/3860858‑3860919                                                              | ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGGAaacg  >  1:1205913/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:1313392/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:1351389/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:1696693/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:1837036/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:1870800/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:2098755/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:2241146/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:255217/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:2703532/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:2824605/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:2912119/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:572663/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:706740/1‑62 (MQ=255) ccGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg  >  1:9611/1‑62 (MQ=255)                                                              | CCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAAACG  >  W3110S.gb/3860858‑3860919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑