Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4040020	4040024	5	34 [1]	[0] 3	rpoH	RNA polymerase, sigma 32 (sigma H) factor

TCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGACCACCAA  >  W3110S.gb/4039959‑4040022                                                             |    tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2521905/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1073708/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2192203/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2216234/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2250010/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2291608/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2419885/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:243151/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:246286/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:214552/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2554555/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:310840/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:407053/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:596353/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:625788/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:686673/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:967395/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1742065/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1139969/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1433559/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1467443/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1509194/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1551905/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1615000/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1805822/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1849202/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:1870685/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2057637/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2067918/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2068493/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2073821/1‑61 (MQ=255) tCAAAGCAGAGATCCACGAATACGTTCTGCGTAA‑‑GGCGTATCGTCAAAGTTGCGACCACCaa  >  1:1669075/1‑62 (MQ=255) tCAAAGCAGAGATCCACGAATACGATCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2089187/1‑61 (MQ=255) tCAAAGCAGACATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGaccac     >  1:2855850/1‑61 (MQ=255)                                                             |    TCAAAGCAGAGATCCACGAATACGTTCTGCGTAACTGGCGTATCGTCAAAGTTGCGACCACCAA  >  W3110S.gb/4039959‑4040022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑