Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4184019	4184020	2	30 [0]	[0] 12	gspD	general secretory pathway component, cryptic

CGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGCAGCAG  >  W3110S.gb/4183957‑4184018                                                              | cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:2514965/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:864146/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:834496/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:834402/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:723242/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:718148/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:536704/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:535044/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:422108/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:275776/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:2576070/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:2428258/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:2293644/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1107243/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1350085/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1518286/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1603681/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1640306/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1707982/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1891390/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1915806/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:2279216/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:2299367/62‑1 (MQ=255) cGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagaag  <  1:1025781/62‑1 (MQ=255)  gTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:514881/61‑1 (MQ=255)  gTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:2835105/61‑1 (MQ=255)  gTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:1986698/61‑1 (MQ=255)  gTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:757467/61‑1 (MQ=255)                   cGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:2525066/44‑1 (MQ=255)                           gCACAAGGCATGAGTAGTGCTGCCAGCAAGcagcag  <  1:98203/36‑1 (MQ=255)                                                              | CGTATTGTTCGTTCTCAGCGTGTCCTGCACAAGGCATGAGTAGTGCTGCCAGCAAGCAGCAG  >  W3110S.gb/4183957‑4184018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑