Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4330101	4330122	22	35 [0]	[0] 12	phnB	conserved hypothetical protein

ACTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGC  >  W3110S.gb/4330039‑4330100                                                              | aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:2066623/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:981163/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:979880/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:886831/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:882160/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:873444/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:652614/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:640950/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:344600/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:2873187/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:2739796/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:2729872/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:2675445/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:2507654/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:2205119/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1009798/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1816180/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1041877/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1140548/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:122263/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1264896/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1311921/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1330607/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1359427/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:139926/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1420768/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1450763/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1515241/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1712236/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1905996/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTAGCTTTTTCCGTTAGc  <  1:2665242/62‑1 (MQ=255) aCTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTCCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1447897/62‑1 (MQ=255)   tttGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:2569954/60‑1 (MQ=255)       ccAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:1425666/56‑1 (MQ=255)       ccAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGc  <  1:207325/56‑1 (MQ=255)                                                              | ACTTTGCCAAAGCCATGCGCCCAGAAAGTTTCCTGCCAGGCCATTTCGATTTTTCCGTTAGC  >  W3110S.gb/4330039‑4330100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑