Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4331138	4331143	6	22 [0]	[0] 14	phnA	predicted phosphonate metabolizing protein

CAATCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGC  >  W3110S.gb/4331076‑4331137                                                              | caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2280741/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:884883/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:867070/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:488884/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:403470/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2840958/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2820804/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2660758/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2484960/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2479700/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:1012690/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2214158/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2180768/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:2055862/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:1956588/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:1592751/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:1331747/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:1122634/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:1116872/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:1105537/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGc  >  1:1013176/1‑62 (MQ=255) caatCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCATCGATTTTGc  >  1:602816/1‑62 (MQ=255)                                                              | CAATCAGTTCTTTTTCACAAACTCAGATTTCAGTTTCATCGGACCAAAACCGTCGATTTTGC  >  W3110S.gb/4331076‑4331137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑