Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4406842	4406854	13	37 [0]	[0] 22	hflK	modulator for HflB protease specific for phage lambda cII repressor

CCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTT  >  W3110S.gb/4406780‑4406841                                                              | ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:331712/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1051423/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2276694/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2319695/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2400905/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2444572/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2622979/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2727151/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2866958/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:221731/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:434497/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:464516/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:468475/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:560208/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:579014/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:76085/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:763652/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:862260/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1412025/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1107925/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1189358/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1232140/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1238026/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1260293/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1294475/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1306735/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1393266/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2055514/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1516505/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1586429/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1640400/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1643964/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1773889/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:1857881/62‑1 (MQ=255) ccTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGGCGCGATCAAGGGCCACCTGAttt  <  1:815706/62‑1 (MQ=255)         cAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:2454192/54‑1 (MQ=255)             tctGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGAttt  <  1:187546/50‑1 (MQ=255)                                                              | CCTGGCGGCAACTCTGAGGGAAATGGAAACAAAGGCGGTCGCGATCAAGGGCCACCTGATTT  >  W3110S.gb/4406780‑4406841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑