Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	581122	581222	101	24 [0]	[0] 11	tfaD	DLP12 prophage region; ECK0553:JW5815:b0561; predicted tail fiber assembly protein

GAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGC  >  W3110S.gb/581062‑581121                                                            | gAACGGTACAGTCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:2208317/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:2480158/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:996156/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:877993/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:86682/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:762191/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:579253/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:444879/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:335195/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:2726294/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:2526427/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:1244503/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:2440858/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:2414010/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:2040952/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:1984793/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:1880536/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:1678017/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:1573994/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:1555031/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:1501299/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:1404471/1‑60 (MQ=255) gAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTAGGGAGGc  >  1:2717372/1‑60 (MQ=255) gAAAGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGc  >  1:531755/1‑60 (MQ=255)                                                            | GAACGGTACAGCCTGGGTGAAAGATGCAGAAGCAGAAAAACTGTTCCGGATTCGGGAGGC  >  W3110S.gb/581062‑581121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑