Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1085588	1085643	56	33 [0]	[0] 33	phoH	conserved hypothetical protein with nucleoside triphosphate hydrolase domain

TTCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCAAAA  >  W3110S.gb/1085527‑1085587                                                             | ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGGATTTTATCCaaaa  >  1:1524312/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:501147/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2495877/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:252747/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2546018/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2633838/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2648616/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2689953/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2825854/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:30918/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2455041/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:504459/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:615323/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:68005/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:749927/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:75860/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:762417/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1069789/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:216202/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2124959/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2077900/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2045701/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1914350/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:191273/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1679160/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1462104/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1413133/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1393669/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1305243/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1276248/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:1073186/1‑61 (MQ=255) ttCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTATCGGCATTTTATCCaaaa  >  1:1764159/1‑61 (MQ=255) ttCATGTGTTACCGACGACGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCaaaa  >  1:2837513/1‑61 (MQ=255)                                                             | TTCATGTGTTACCGACGCCGTAAACGGTGCGCGTAGCCGTTTTTCGGCATTTTATCCAAAA  >  W3110S.gb/1085527‑1085587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑