Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1133942	1133985	44	10 [0]	[0] 18	flgD	flagellar hook assembly protein

GGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATG  >  W3110S.gb/1133902‑1133941                                        | ggAGTTCACAGTTTCACCTGGGACGGTACGTTGActgctg  <  1:1445760/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:1241029/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:132882/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:1535751/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:1881193/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:2096472/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:2217280/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:2425470/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:2538509/40‑1 (MQ=255) ggAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATg  <  1:2728526/40‑1 (MQ=255)                                        | GGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATG  >  W3110S.gb/1133902‑1133941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑