Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1134629	1134659	31	11 [0]	[0] 10	flgE	flagellar hook protein

CCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATT  >  W3110S.gb/1134567‑1134628                                                              | ccccAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:315641/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:1072125/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:1289725/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:1326174/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:1400250/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:1732851/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:1918172/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:2009133/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:2102438/62‑1 (MQ=255) cccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:2741332/62‑1 (MQ=255)  ccGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAAtt  <  1:2197284/61‑1 (MQ=255)                                                              | CCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATT  >  W3110S.gb/1134567‑1134628

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑