Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1134717	1134740	24	10 [0]	[0] 14	flgE	flagellar hook protein

CAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAG  >  W3110S.gb/1134660‑1134716                                                         | cAGCGCGAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:2884268/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:102538/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:1256069/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:1711253/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:1764897/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:2385669/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:2696714/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:2831261/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:2854442/57‑1 (MQ=255) cAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAg  <  1:625691/57‑1 (MQ=255)                                                         | CAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAG  >  W3110S.gb/1134660‑1134716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑