Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1138317	1138327	11	40 [0]	[0] 6	flgI	predicted flagellar basal body protein

GCTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTC  >  W3110S.gb/1138255‑1138316                                                              | gcTGGCGCAGGGCAATATTCTGGTTGGCTGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2101819/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2815723/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2067166/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2467391/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2512374/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2527494/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2653226/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2673501/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2695957/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2744741/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2043541/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:2819093/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:436992/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:611491/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:714242/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:72520/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:742215/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:751538/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:870494/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:967364/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1483875/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1008827/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1077946/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1105469/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1125865/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1127048/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1174707/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1292697/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1331761/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1463989/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1008120/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:151872/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1588997/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1589752/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1598413/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1641388/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1705123/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1829579/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1829839/1‑62 (MQ=255) gcTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTc  >  1:1907909/1‑62 (MQ=255)                                                              | GCTGGCGCAGGGCAATATTCTGGTTGGCGGCGCAGGAGCCTCCGCTGGCGGTAGCAGTGTTC  >  W3110S.gb/1138255‑1138316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑