Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1141245	1141288	44	2 [0]	[0] 35	flgK	flagellar hook‑filament junction protein 1

GCTTCACGCTGAAACCAGTAAGTGACGCCATCGTCAACATGGATGTATTAATCACCGACGAA  >  W3110S.gb/1141183‑1141244                                                              | gCTTCACGCTGAAACCAGTAAGTGACGCCATCGTCAACATGGATGTATTAATCACCGACGaa  >  1:2218921/1‑62 (MQ=255) gCTTCACGATGAAACCAGTAAGTGACGCCATCGTCAACATGGATGTATTAATCACCGACGaa  >  1:1791423/1‑62 (MQ=255)                                                              | GCTTCACGCTGAAACCAGTAAGTGACGCCATCGTCAACATGGATGTATTAATCACCGACGAA  >  W3110S.gb/1141183‑1141244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑