Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1277459	1277500	42	39 [0]	[0] 4	narX	sensory histidine kinase in two‑component regulatory system with NarL

ATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGACCAC  >  W3110S.gb/1277411‑1277458                                                | aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGATTAAAGGTGaccac  >  1:599534/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2687836/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2017587/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2128352/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2131858/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2361460/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2460002/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2504654/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2569469/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2586442/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2587911/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2005096/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2706095/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:2838853/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:287556/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:517890/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:538867/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:552770/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:837002/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:89321/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1718961/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1049359/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1196583/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1221534/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:126940/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1399319/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1473166/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1551256/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1709154/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1711352/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1047765/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1741653/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1756855/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1869215/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1914797/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1956097/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:196292/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGaccac  >  1:1966844/1‑48 (MQ=255) aTCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGCTGacaac  >  1:1788855/1‑48 (MQ=255)                                                | ATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGACCAC  >  W3110S.gb/1277411‑1277458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑