Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1653553	1653590	38	7 [0]	[0] 27	intQ	predicted defective integrase

AAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTACTG  >  W3110S.gb/1653491‑1653552                                                              | aaaaaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTactg  >  1:10000/1‑62 (MQ=255) aaaaaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTactg  >  1:2154695/1‑62 (MQ=255) aaaaaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTactg  >  1:2290310/1‑62 (MQ=255) aaaaaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTactg  >  1:2446357/1‑62 (MQ=255) aaaaaaaTCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTactg  >  1:2530862/1‑62 (MQ=255) aaaaaaaTCTTGCCTCATCGATTAATAAAGAAAAATAACTGGAGGTTCGTAAAGAGTTactg  >  1:2194697/1‑62 (MQ=255) aaaaaaaTCTTGACTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTactg  >  1:535913/1‑62 (MQ=255)                                                              | AAAAAAATCTTGCCTCATCGATTAATAAAGAAAAATTACTGGAGGTTCGTAAAGAGTTACTG  >  W3110S.gb/1653491‑1653552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑