Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1905108	1905125	18	2 [0]	[0] 73	manY	mannose‑specific enzyme IIC component of PTS

ATCATCGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACG  >  W3110S.gb/1905126‑1905186 |                                                             atcatcGTTCGTACTATTACCGTTGCTTTCCAGCa                            >  1:1850727/1‑35 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGTGGATAAGGCTGCTGATAACg  >  1:202475/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCg                     >  1:111139/1‑42 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGAt                  >  1:1551921/1‑45 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAAc   >  1:1329315/1‑60 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2473641/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:294784/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2919476/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2812953/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2696260/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2676104/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2535771/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2519100/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2484501/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:452247/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2431504/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:240538/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2329922/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2227227/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2178533/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:216092/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:639882/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:955803/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:937907/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:864714/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:857260/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:844429/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:790816/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:733752/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:704943/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:363845/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:637009/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:613307/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:580512/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:533714/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:525263/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:458331/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2070422/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:41002/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:133103/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1636314/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1633089/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1604680/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1597232/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1495473/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1487869/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1439765/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1343485/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1664579/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1245251/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:12452/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1155316/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1145310/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1117236/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1089286/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1070174/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1804673/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2095980/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1037233/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2070226/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2038075/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:202659/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1896493/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1847325/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1840637/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:2112748/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1785241/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1782566/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1766615/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1698683/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1681117/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACg  >  1:1675481/1‑61 (MQ=255) atcatcGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGAGGATAAGGCTCCTGATAACg  >  1:2807540/1‑61 (MQ=255) |                                                             ATCATCGTTCGTACTATTACCGTTGCTTTCCAGCACGCTGCGGATAAGGCTGCTGATAACG  >  W3110S.gb/1905126‑1905186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑