Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1964968	1964968	1	4 [0]	[0] 17	flhA	predicted flagellar export pore protein

ACATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGC  >  W3110S.gb/1964969‑1965024 |                                                        aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:2731683/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:856845/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:812900/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:685305/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:473295/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:439223/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:340370/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:2916407/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:2890791/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:1493723/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:2607167/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:1983338/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:1873048/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:1821831/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:1663328/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:1557032/56‑1 (MQ=255) aCATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGc  <  1:1538339/56‑1 (MQ=255) |                                                        ACATGGACTTCATCTTTGCCAGGAAACCACTGCTGGGTAATCGCCCGTCCCAACGC  >  W3110S.gb/1964969‑1965024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑