Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006689	2006738	50	5 [0]	[0] 36	fliD	flagellar filament capping protein

CGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATC  >  W3110S.gb/2006739‑2006800 |                                                              cgcTGGAAAACATCACCCTGAACCTGAACGATGTcacca                         >  1:1564276/1‑39 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCAt   >  1:930223/1‑61 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCAt   >  1:1412886/1‑61 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCAt   >  1:2926236/1‑61 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:2155305/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:2023396/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:2341213/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:2464734/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:2742419/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:2774393/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:2799013/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:373022/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:485394/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:496005/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:586140/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:742258/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:849570/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:867863/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:901188/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1623087/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1096650/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1174443/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1229741/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1485175/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1504817/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1515044/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1515696/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1549204/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:204923/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1645047/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1709107/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1788893/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1811537/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1825983/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1898530/1‑62 (MQ=255) cgcTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATc  >  1:1088053/1‑62 (MQ=255) |                                                              CGCTGGAAAACATCACCCTGAACCTGAACGATGTCACCACGGGCAACCAGACGCTAACCATC  >  W3110S.gb/2006739‑2006800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑