Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2006860	2006875	16	25 [0]	[0] 34	fliD	flagellar filament capping protein

AGCAGCCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGG  >  W3110S.gb/2006876‑2006937 |                                                              agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1028450/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:931998/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:92634/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:775171/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:516586/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:503956/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:451576/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:428442/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2900251/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2874301/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2862825/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2814487/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2780745/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2608027/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2581262/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2518052/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1505158/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1027563/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1073501/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1127458/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1165262/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1225150/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:124289/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1293138/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1360632/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2155075/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1534524/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1845641/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1868318/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1944694/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:1979068/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATgg  >  1:2092409/1‑62 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATg   >  1:264935/1‑61 (MQ=255) agcagcCTGACCAAATACACCGCCGTAGAAGCggg                             >  1:2403842/1‑35 (MQ=255) |                                                              AGCAGCCTGACCAAATACACCGCCGTAGATGCGGGAGCTGATAGCCAGAGTTCTAGCAATGG  >  W3110S.gb/2006876‑2006937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑