Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2016222	2016299	78	17 [0]	[0] 25	fliF	flagellar basal‑body MS‑ring and collar protein

CGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAA  >  W3110S.gb/2016300‑2016361 |                                                              cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGGACGCCTCCGGCAAATCaa  >  1:2346137/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:1056627/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:520516/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2795432/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2777123/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2525524/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2511438/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2423270/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2376987/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2293375/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2238492/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:2120269/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:1763826/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:1707483/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:1531255/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:1505062/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:1086978/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCaa  >  1:1022693/1‑62 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCa   >  1:2176764/1‑61 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCa   >  1:2293585/1‑61 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCa   >  1:2369103/1‑61 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCa   >  1:1895291/1‑61 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCa   >  1:2378805/1‑61 (MQ=255) cGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCa   >  1:2816427/1‑61 (MQ=255) cGTTGTCGAATCAACAGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCa   >  1:2892866/1‑61 (MQ=255) |                                                              CGTTGTCGAATCAACCGGCACCTGCGAATAACGCGCCAATCAGCACGCCTCCGGCAAATCAA  >  W3110S.gb/2016300‑2016361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑