Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2016482	2016520	39	2 [0]	[0] 9	fliF	flagellar basal‑body MS‑ring and collar protein

AAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGA  >  W3110S.gb/2016521‑2016582 |                                                              aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:1158557/1‑62 (MQ=255) aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:1213974/1‑62 (MQ=255) aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:1415173/1‑62 (MQ=255) aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:1731898/1‑62 (MQ=255) aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:2211717/1‑62 (MQ=255) aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:2349542/1‑62 (MQ=255) aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:449421/1‑62 (MQ=255) aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:575201/1‑62 (MQ=255) aaaaCCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGa  >  1:969691/1‑62 (MQ=255) |                                                              AAAACCTTGCCAGATGGCAAACCGTTGCCTCTCAGCAACGAACAGATGAAGCAAATTGAAGA  >  W3110S.gb/2016521‑2016582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑