Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2074423	2074448	26	3 [0]	[0] 19	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

TGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC  >  W3110S.gb/2074449‑2074509 |                                                             tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:2401686/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:961466/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:77392/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:735140/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:685640/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:543928/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:460759/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:391090/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:352205/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:2740446/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:1468918/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:2167077/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:200388/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:1998532/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:1811403/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:1699733/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:1595355/1‑61 (MQ=255) tgtgCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:1548939/1‑61 (MQ=255) tgtgCACAACCGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTc  >  1:1774289/1‑61 (MQ=255) |                                                             TGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC  >  W3110S.gb/2074449‑2074509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑