Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2076631	2076644	14	14 [0]	[0] 19	flu	antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

GAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCACCC  >  W3110S.gb/2076645‑2076706 |                                                              gAATGGCACATCACTGGACCTGCAGGCCGGACTGGaa                           >  1:1223253/1‑37 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGcc                        >  1:2668434/1‑40 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:194258/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:66263/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:545855/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:306713/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:2739172/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:2659487/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:2505433/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:2211324/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:2014239/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:1012543/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:1743817/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:1743423/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:1408650/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:1352460/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:1344097/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:132965/1‑62 (MQ=255) gAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCAccc  >  1:1184381/1‑62 (MQ=255) |                                                              GAATGGCACATCACTGGACCTGCAGGCCGGACTGGAAGCCCGTGTCCGGGAAAATATCACCC  >  W3110S.gb/2076645‑2076706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑