Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2325570	2325594	25	19 [0]	[0] 14	atoS	sensory histidine kinase in two‑component regulatory system with AtoC

ACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTC  >  W3110S.gb/2325595‑2325655 |                                                             aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:1064512/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:1184912/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:1210407/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:1494900/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:190180/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:2251971/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:2340537/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:2360120/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:242151/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:2494070/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:2513024/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:296380/61‑1 (MQ=255) aCTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:716136/61‑1 (MQ=255) aCTGGCTATAAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTc  <  1:1629700/61‑1 (MQ=255) |                                                             ACTGGCTATCAACGCCATGAACTGGTAGGGCAGCCTTACTCCATGTTGTTCGACAATACTC  >  W3110S.gb/2325595‑2325655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑