Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2472504	2472568	65	13 [0]	[0] 14	intS	predicted prophage CPS‑53 integrase

CAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCAA  >  W3110S.gb/2472569‑2472630 |                                                              cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGAt                            >  1:2720779/1‑36 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCg                        >  1:358957/1‑40 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:1195646/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:1343256/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:2223454/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:2242959/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:2547902/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:2567199/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:2696678/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:2736084/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:2863643/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:349217/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:695963/1‑62 (MQ=255) cAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCaa  >  1:946558/1‑62 (MQ=255) |                                                              CAAGAAGAACTTCCCGTTTCTTCCTGCAGACCAGATCCCGGCATTCAACAAAGCACTGGCAA  >  W3110S.gb/2472569‑2472630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑