Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3169825	3169828	4	13 [0]	[1] 8	qseC	sensory histidine kinase in two‑component regulatory system with QseB

CACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCC  >  W3110S.gb/3169826‑3169890    |                                                              cacacaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTa     <  1:2789069/62‑1 (MQ=255)    acaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCt                  >  1:478167/1‑46 (MQ=255)    acaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGcc  >  1:1003727/1‑62 (MQ=255)    acaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGcc  >  1:1460959/1‑62 (MQ=255)    acaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGcc  >  1:2887126/1‑62 (MQ=255)    acaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGc   >  1:2906210/1‑61 (MQ=255)    acaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGc   >  1:310675/1‑61 (MQ=255)    acaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACATCGTAGc   >  1:2859517/1‑61 (MQ=255)    |                                                              CACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCC  >  W3110S.gb/3169826‑3169890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑