Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4327323	4327329	7	42 [0]	[0] 31	phnE	ECK4096:JW4064:b4103; phosphonate/organophosphate ester transporter

CAGCAGTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCGG  >  W3110S.gb/4327330‑4327391 |                                                              cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2535140/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:99356/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:954146/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:934955/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:835/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:513853/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:503370/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:367746/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:358553/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2854788/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2751310/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2640860/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2599833/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:257765/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2569709/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2547620/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1032666/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:242377/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2388909/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:2130971/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1844133/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1749747/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1634606/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1595515/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1559430/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1538250/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1400010/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1305655/62‑1 (MQ=255) cagcagTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1281216/62‑1 (MQ=255) cagcagTGGCATCACCTATGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1273421/62‑1 (MQ=255) cagcagTGGAATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCgg  <  1:1129069/62‑1 (MQ=255) |                                                              CAGCAGTGGCATCACCTGTGGCAGCACGCCGTAGAGGATCTCTTCGAGCTTGTTGGCACCGG  >  W3110S.gb/4327330‑4327391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑