Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	248201	248326	126	24 [0]	[0] 9	yafM/fhiA	conserved hypothetical protein/ECK0230:JW5811:b0229; flagellar system protein, promoterless fragment

CATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCC  >  W3110S.gb/248327‑248388 |                                                              cATCCGGCAGTTGTGCACCAATGCTGGATACTTAc                             >  1:2386466/1‑35 (MQ=255) cATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTcc  >  1:1210066/1‑62 (MQ=255) cATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTcc  >  1:1780832/1‑62 (MQ=255) cATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTcc  >  1:197406/1‑62 (MQ=255) cATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTcc  >  1:2365729/1‑62 (MQ=255) cATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTcc  >  1:2573087/1‑62 (MQ=255) cATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTcc  >  1:656244/1‑62 (MQ=255) cATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTcc  >  1:912289/1‑62 (MQ=255) cATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTc   >  1:30779/1‑61 (MQ=255) |                                                              CATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCC  >  W3110S.gb/248327‑248388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑