Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1141727	1141769	43	36 [0]	[0] 10	flgL	flagellar hook‑filament junction protein

AGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCAAAAAGTGT  >  W3110S.gb/1141770‑1141829 |                                                            aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:1067110/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:1097111/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:1429935/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:1525304/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:1583917/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:1586348/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:336758/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:554482/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCaaa        <  1:961129/54‑1 (MQ=255) aGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCAAAAAgtgt  >  1:1868980/1‑60 (MQ=255) |                                                            AGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACTTTCGCCACTCAAAAAGTGT  >  W3110S.gb/1141770‑1141829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑