Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1211663	1211680	18	5 [0]	[0] 26	pin	site‑specific DNA recombinase

TCCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAACTCCTC  >  W3110S.gb/1211681‑1211742 |                                                              tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAAtt                  >  1:1892843/1‑46 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1956796/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:889081/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:807893/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:729739/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:604800/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:55548/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:398483/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:2849416/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:2623256/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:2359467/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:2160121/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:2079932/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:2009428/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1038938/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1934801/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1759975/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1658776/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:163062/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1589834/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1561819/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1495015/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1318924/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1233843/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1206463/1‑62 (MQ=255) tcCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAActcctc  >  1:1059816/1‑62 (MQ=255) |                                                              TCCCAAACTTACACCAGAACAATGGGCACAAGCTGGACGATTAATTGCAGCAGGAACTCCTC  >  W3110S.gb/1211681‑1211742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑