Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1247717	1247740	24	4 [0]	[1] 31	treA	periplasmic trehalase

GTACAGCGGGAACAGGGCGGCCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCATACCAGCC  >  W3110S.gb/1247724‑1247801                  |                                                             gTACAGCGGGAACAGGGCGGCCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCg                   <  1:19713/61‑1 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATc              >  1:2768602/1‑49 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:866257/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:1030077/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:829967/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:827461/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:76274/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:728566/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:719888/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:672945/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:606433/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:551840/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:502416/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:447471/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:2907916/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:2842229/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:2810381/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:2637743/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:2588213/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:2498140/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:234792/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:2243061/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:220988/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:2082446/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:1999400/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:1953436/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:1770095/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:1460900/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCAt         >  1:1420231/1‑54 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCATACCAgac  >  1:363263/1‑59 (MQ=255)                  cggcCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCCGCAt         >  1:2173177/1‑54 (MQ=255)                  |                                                             GTACAGCGGGAACAGGGCGGCCGCGGTTAACTGATTGCGCACTTTATGACTTTTCAGGTCGTAATCGGCATACCAGCC  >  W3110S.gb/1247724‑1247801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑